Medha Bhagwat received her PhD in
biochemistry in December 1994 from the University of Maryland
at College Park. She did her postdoctoral training at NIDDK,
NIH on the structure-function studies of bacteriophage T4
RNase H and its interaction with other proteins at the replication
fork.
Medha joined NCBI in 1998 in the GenBank database. Since
2001, she has been involved in a variety of bioinformatics
training that NCBI offers. She teaches at the NCBI Core-Bioinformatics
Facility, which trains themrepresentatives from the NIH
institutes in the use of the NCBI bioinformatics tools in
9-week sessions. She is involved in coordinating a network
of bioinformatics specialists serving the individual NIH
institutes. Medha also develops and teaches several 2 hour
mini-courses (http://www.ncbi.nlm.nih.gov/Class/minicourses/)
which describe the effective usage of a set of bioinformatics
tools for solving a scientific problem. The courses have
been taught more than 250 times to about 8000 participants.
Dr. Cooper earned his Ph.D. in 1996 in Marine
Science and has a diverse background in the biological sciences
including marine biology, biochemistry and molecular biology.
For the past five years, as a biologist on the User Services
staff of the National Center for Biotechnology Information,
he has provided educational outreach and training programs
on the tools and databases of NCBI.
Jennifer McDowall provides curation
and training for the InterPro database. She has a background
in molecular biology and bioinformatics, and has held several
research positions in both the pharmaceutical industry and
academia, as well as teaching positions at the Open University
for biology and genetics. She joined the EBI in 2003 after
working on the Human Genome Project, and has given courses
and talks on several EBI proteomics databases in numerous
locations worldwide.
Xosé Fernández is the Project
Leader for Ensembl outreach and training. He has a background
in molecular biology and bioinformatics, and has held several
research positions in both industry and academia in Spain,
France and Britain. He joined the Ensembl project in 2003,
and has given courses and talks on Ensembl in over 50 locations
worldwide.
Phil Jones
Phil Jones is the technical lead software engineer for the
PRIDE project. He has a background in both biological sciences
and software engineering, and holds a Post-Graduate Certificate
in Education. He has held positions in software engineering
and in science education. He has given courses and talks
on various software development projects in numerous locations
worldwide.
Helen Parkinson is the curation coordinator
for the ArrayExpress, the international repository for microarray
data based at the EBI. She has a background in eukaryote
genetics and previously worked for the EMBL database. She
is an expert in annotation standards for microarray data,
and is coordinator of several EU projects.
David Croft is a bioinformatician working
for the Reactome team, which is producing a fully curated
database of biological processes. His background is in computer
science and bioinformatics, and he has worked both in academia
and in industry in England and Germany. He has been involved
with Reactome since December 2004, and in addition to software
related work, has given numerous talks and several seminars
on topics related to this area.
Sandra Orchard provides curation for three
EBI databases: UniProt, InterPro and IntAct. She has a background
in biological sciences, and has held several research positions
in academia and in the pharmaceutical industry, including
project management. She joined the EBI in 2002 to provide
proteomics annotation, and has given courses and talks on
several EBI proteomics databases in numerous locations worldwide.
She is currently a member of both the Proteomics Standards
Initiative and of the Publication Committee of the Human
Proteome Organisation (HUPO).
Sameer Velankar co-ordinates curation and database work
for the MSD
database. He has a background in Crystallography and Bioinformatics.
He
joined the MSD group in 2000 after a post-doctoral fellowship
at Oxford
University working on the crystal structures of DNA helicases.
At the EBI he
has been involved in development of methodologies for the
integration of
information from biological databases and database query
systems. He has
given courses and talks on the MSD database and
PDB related activities in numerous locations worldwide.
Course:
Macromolecular Structure Database
Yannick
Pouliot - Stanford
Dr. Yannick Pouliot is the Bioresearch Informationist
at the Lane Medical Library at Stanford University.
Prior to joining Stanford’s Lane Library, Dr. Pouliot
provided bioinformatics consulting to organizations such
as SRI International and the Pacific Northwest National
Laboratory. Previously, he was Director of Informatics at
Kalypsys, a drug discovery startup of the Novartis Genome
Research Foundation. Between 1999 and 2001, he was Director
of Bioinformatics Knowledge Engineering at DoubleTwist,
where he originated the application of automated research
agents for biocomputational analysis, ultimately used by
25,000 researchers worldwide. Before that he held senior
bioinformatics positions in genomics companies such as Progenitor
and Sequana Therapeutics, as well as at software company
Molecular Simulations.
Dr. Pouliot received his Ph.D. degree from the Department
of Biology at McGill University for research in the role
of intercellular adhesion in muscle formation, and an M.B.A.
in technology management from the University of Phoenix.
He did post-graduate studies at the Généthon
human genome laboratory in Paris, France.
Courses Summarizing Candidate Gene Data: The Surprising
Power of SOAPed-Up Excel
Catherine
Ball is the director of the Stanford Microarray Database,
which is used by hundreds of researchers using microarray
technology to address problems that include tumor biology,
development, evolution and basic cell biology. Her background
in both bench biology and analysis and presentation of genome-scale
data enables her to bridge the gap that frequently exists
between researchers posing biological questions and the
statisticians and computer scientists attempting to provide
the means to answer them. Dr. Ball is an active member of
the Microarray Gene Expression Data society (MGED) which
is working to establish standards for DNA microarray data
and experimental descriptions.
Courses Accessing and Analyzing Public Data with the Stanford
Microarray Database
Axexander
Shearer - SRI International
Alexander Shearer is a member of the Bioinformatics
Research Group at SRI International and a curator for the EcoCyc
database. His background is in molecular and cell biology, researching
metabolic pathways and regulatory mechanisms. He has been working
on EcoCyc and the BioCyc collection since early 2005 and has given
many talks about both BioCyc and its undergirding Pathway Tools
software package.